Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-02-10-NextSeq/juicer-L1990-SSB01_symbiotic-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-rerun -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-02-10-NextSeq/juicer-L1990-SSB01_symbiotic-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-rerun -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta
Sequenced Read Pairs:  83,376,742
 Normal Paired: 1,201,962 (1.44%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 82,174,780 (98.56%)
 Ligation Motif Present: 73,489 (0.09%)
Alignable (Normal+Chimeric Paired): 1,201,962 (1.44%)
Unique Reads: 1,133,651 (1.36%)
PCR Duplicates: 68,043 (0.08%)
Optical Duplicates: 268 (0.00%)
Library Complexity Estimate: 10,206,976
Intra-fragment Reads: 685,093 (0.82% / 60.43%)
Below MAPQ Threshold: 193,904 (0.23% / 17.10%)
Hi-C Contacts: 254,654 (0.31% / 22.46%)
 Ligation Motif Present: 634  (0.00% / 0.06%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 26% - 25% - 25%
Inter-chromosomal: 37,325  (0.04% / 3.29%)
Intra-chromosomal: 217,329  (0.26% / 19.17%)
Short Range (<20Kb): 210,699  (0.25% / 18.59%)
Long Range (>20Kb): 6,630  (0.01% / 0.58%)