#!/bin/bash
#SBATCH --job-name=zJ1983-1
#SBATCH --output=zJ1983.1.out
#SBATCH --error=zJ1983.1.err
#SBATCH --time=160:00:00
#SBATCH -p akundaje,sfgf
#SBATCH --cpus-per-task=16
#SBATCH --mem=200000
export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load java; module load system; module load parallel/20180122; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L1983-OS08_Hi-C-all_reads -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L1983-OS08_Hi-C-all_reads -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa