Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2020-12-18-NextSeq-run/juicer-L1972-GM12878_HiKAS_10M -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2020-12-18-NextSeq-run/juicer-L1972-GM12878_HiKAS_10M -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  130,465,513
 Normal Paired: 124,322,330 (95.29%)
 Chimeric Paired: 284,714 (0.22%)
 Chimeric Ambiguous: 212,911 (0.16%)
 Unmapped: 5,645,558 (4.33%)
 Ligation Motif Present: 723,133 (0.55%)
Alignable (Normal+Chimeric Paired): 124,607,044 (95.51%)
Unique Reads: 97,843,486 (75.00%)
PCR Duplicates: 26,654,037 (20.43%)
Optical Duplicates: 109,521 (0.08%)
Library Complexity Estimate: 247,578,077
Intra-fragment Reads: 48,068,068 (36.84% / 49.13%)
Below MAPQ Threshold: 18,484,641 (14.17% / 18.89%)
Hi-C Contacts: 31,290,777 (23.98% / 31.98%)
 Ligation Motif Present: 312,935  (0.24% / 0.32%)
 3' Bias (Long Range): 20% - 80%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 561,849  (0.43% / 0.57%)
Intra-chromosomal: 30,728,928  (23.55% / 31.41%)
Short Range (<20Kb): 30,419,458  (23.32% / 31.09%)
Long Range (>20Kb): 309,414  (0.24% / 0.32%)