Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2020-12-18-NextSeq-run/juicer-L1971-GM12878_HiKAS_10M -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2020-12-18-NextSeq-run/juicer-L1971-GM12878_HiKAS_10M -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  112,167,470
 Normal Paired: 107,810,332 (96.12%)
 Chimeric Paired: 225,705 (0.20%)
 Chimeric Ambiguous: 162,694 (0.15%)
 Unmapped: 3,968,739 (3.54%)
 Ligation Motif Present: 771,505 (0.69%)
Alignable (Normal+Chimeric Paired): 108,036,037 (96.32%)
Unique Reads: 84,371,589 (75.22%)
PCR Duplicates: 23,570,807 (21.01%)
Optical Duplicates: 93,641 (0.08%)
Library Complexity Estimate: 209,691,525
Intra-fragment Reads: 43,123,522 (38.45% / 51.11%)
Below MAPQ Threshold: 15,386,918 (13.72% / 18.24%)
Hi-C Contacts: 25,861,149 (23.06% / 30.65%)
 Ligation Motif Present: 333,087  (0.30% / 0.39%)
 3' Bias (Long Range): 19% - 81%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 343,978  (0.31% / 0.41%)
Intra-chromosomal: 25,517,171  (22.75% / 30.24%)
Short Range (<20Kb): 25,268,404  (22.53% / 29.95%)
Long Range (>20Kb): 248,739  (0.22% / 0.29%)