Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2020-12-18-NextSeq-run/juicer-L1970-GM12878_HiKAS_10M -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2020-12-18-NextSeq-run/juicer-L1970-GM12878_HiKAS_10M -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  142,917,238
 Normal Paired: 136,592,543 (95.57%)
 Chimeric Paired: 292,071 (0.20%)
 Chimeric Ambiguous: 215,447 (0.15%)
 Unmapped: 5,817,177 (4.07%)
 Ligation Motif Present: 887,867 (0.62%)
Alignable (Normal+Chimeric Paired): 136,884,614 (95.78%)
Unique Reads: 106,015,847 (74.18%)
PCR Duplicates: 30,760,688 (21.52%)
Optical Duplicates: 108,079 (0.08%)
Library Complexity Estimate: 256,543,497
Intra-fragment Reads: 54,507,727 (38.14% / 51.41%)
Below MAPQ Threshold: 19,510,631 (13.65% / 18.40%)
Hi-C Contacts: 31,997,489 (22.39% / 30.18%)
 Ligation Motif Present: 373,713  (0.26% / 0.35%)
 3' Bias (Long Range): 20% - 80%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 475,988  (0.33% / 0.45%)
Intra-chromosomal: 31,521,501  (22.06% / 29.73%)
Short Range (<20Kb): 31,217,102  (21.84% / 29.45%)
Long Range (>20Kb): 304,348  (0.21% / 0.29%)