Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2020-12-18-NextSeq-run/juicer-L1970-GM12878_HiKAS_10M -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2020-12-18-NextSeq-run/juicer-L1970-GM12878_HiKAS_10M -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  142,917,238
 Normal Paired: 136,592,543 (95.57%)
 Chimeric Paired: 292,071 (0.20%)
 Chimeric Ambiguous: 215,447 (0.15%)
 Unmapped: 5,817,177 (4.07%)
 Ligation Motif Present: 887,867 (0.62%)
Alignable (Normal+Chimeric Paired): 136,884,614 (95.78%)
Unique Reads: 106,015,847 (74.18%)
PCR Duplicates: 30,760,688 (21.52%)
Optical Duplicates: 108,079 (0.08%)
Library Complexity Estimate: 256,543,497
Intra-fragment Reads: 54,507,727 (38.14% / 51.41%)
Below MAPQ Threshold: 12,309,475 (8.61% / 11.61%)
Hi-C Contacts: 39,198,645 (27.43% / 36.97%)
 Ligation Motif Present: 491,142  (0.34% / 0.46%)
 3' Bias (Long Range): 24% - 76%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 1,042,283  (0.73% / 0.98%)
Intra-chromosomal: 38,156,362  (26.70% / 35.99%)
Short Range (<20Kb): 37,681,240  (26.37% / 35.54%)
Long Range (>20Kb): 475,039  (0.33% / 0.45%)