#!/bin/bash
#SBATCH --job-name=zL1624-1
#SBATCH --output=zL1624.1.out
#SBATCH --error=zL1624.1.err
#SBATCH --time=160:00:00
#SBATCH -p akundaje,sfgf
#SBATCH --cpus-per-task=16
#SBATCH --mem=100000
export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2020-07-14-NextSeq-run/juicer-L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2020-07-14-NextSeq-run/juicer-L1624-Tetrahymena_thermophila-MboI_MseI_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Tetrahymena_thermophila/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Tetrahymena_thermophila/bwa-indexes/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.fa