change log: version december 14, 2016 + substituted juicebox_tools.jar for a version with working -r and -n flags + made appropriate modifications in juicebox_tools.sh + added explicit building of the options string based on zoom + added unprompted option -n for no normalization + added unprompted -c flag for clean-up after done to delete the lifted mnd file ————————————————————— version december 7, 2016. + renamed script + substitute explicit paths to dependencies to check in same folder as wrapper script + remove option to pass genome id + change argument order + remove option to pass stats and graph files + added unscaled outputs to superscaffold track output + fixed superscaffold annotation 1-offset ————————————————————— version december 1, 2016 + substituted true fragments for mock fragments. TODO: do proper fragment number remapping to achieve inner peace ————————————————————— version july 18, 2016 + added GNU Parallel wrapper as an option ————————————————————— earlier versions ————————————————————— This is a script to visualize draft assemblies based on Juicebox pre function from Juicebox Command Line Tools.