Index of /kundaje/marinovg/oak/ENCODE4/datasets-Hi-C/L1621-Pavlovia_cf._CCMP459-Hi-C/juicer-L1621-Pavlovia_cf._CCMP459-Hi-C-3D_DNA

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]LICENSE2021-02-25 12:54 1.0K 
[TXT]README.md2021-02-25 12:54 8.7K 
[TXT]archive.scaffolds.edits.at.step.1.txt2021-03-01 13:14 77K 
[ ]coverage_wide.at.step.0.wig2021-03-01 10:19 51K 
[ ]coverage_wide.at.step.1.wig2021-03-01 13:14 51K 
[DIR]data/2021-02-25 12:54 -  
[ ]depletion_score_narrow.at.step.0.wig2021-03-01 10:19 848K 
[ ]depletion_score_narrow.at.step.1.wig2021-03-01 13:14 846K 
[ ]depletion_score_wide.at.step.0.wig2021-03-01 10:15 45K 
[ ]depletion_score_wide.at.step.1.wig2021-03-01 13:10 45K 
[DIR]edit/2021-02-25 12:54 -  
[TXT]edits.for.step.1.txt2021-03-01 10:19 67K 
[TXT]edits.for.step.2.txt2021-03-01 13:14 6.0K 
[DIR]finalize/2021-02-25 12:54 -  
[TXT]h.edits.txt2021-03-01 16:37 47  
[DIR]lift/2021-02-25 12:54 -  
[DIR]merge/2021-02-25 12:54 -  
[ ]mismatch_narrow.at.step.0.bed2021-03-01 10:19 2.5K 
[ ]mismatch_narrow.at.step.1.bed2021-03-01 13:14 2.5K 
[ ]mismatch_wide.at.step.0.bed2021-03-01 10:15 2.3K 
[ ]mismatch_wide.at.step.1.bed2021-03-01 13:10 2.3K 
[TXT]mismatches.at.step.0.txt2021-03-01 10:19 9.1K 
[TXT]mismatches.at.step.1.txt2021-03-01 13:14 8.7K 
[DIR]polish/2021-02-25 12:54 -  
[ ]repeats_wide.at.step.0.bed2021-03-01 10:19 3.0K 
[ ]repeats_wide.at.step.1.bed2021-03-01 13:14 1.4K 
[TXT]run-asm-pipeline-post-review.sh2021-02-25 12:54 11K 
[TXT]run-asm-pipeline.sh2021-02-25 12:54 44K 
[DIR]scaffold/2021-02-25 12:54 -  
[ ]scaffolds.0.asm2021-03-01 09:49 236K 
[ ]scaffolds.0.assembly2021-03-01 09:53 2.1M 
[ ]scaffolds.0.cprops2021-03-01 05:56 1.8M 
[ ]scaffolds.0.hic2021-03-01 10:15 167M 
[TXT]scaffolds.0_asm.scaffold_track.txt2021-03-01 09:53 5.7M 
[TXT]scaffolds.0_asm.superscaf_track.txt2021-03-01 09:53 3.4M 
[ ]scaffolds.1.asm2021-03-01 12:45 237K 
[ ]scaffolds.1.assembly2021-03-01 12:48 2.1M 
[ ]scaffolds.1.cprops2021-03-01 10:19 1.9M 
[ ]scaffolds.1.hic2021-03-01 13:10 168M 
[TXT]scaffolds.1_asm.scaffold_track.txt2021-03-01 12:48 5.8M 
[TXT]scaffolds.1_asm.superscaf_track.txt2021-03-01 12:48 3.5M 
[ ]scaffolds.2.asm2021-03-01 15:33 238K 
[ ]scaffolds.2.assembly2021-03-01 15:36 2.1M 
[ ]scaffolds.2.cprops2021-03-01 13:14 1.9M 
[ ]scaffolds.2.hic2021-03-01 15:57 168M 
[TXT]scaffolds.2_asm.scaffold_track.txt2021-03-01 15:36 5.8M 
[TXT]scaffolds.2_asm.superscaf_track.txt2021-03-01 15:36 3.5M 
[ ]scaffolds.FINAL.assembly2021-03-01 17:33 2.2M 
[ ]scaffolds.FINAL.fasta2021-03-01 17:33 70M 
[ ]scaffolds.FINAL.hic2021-03-01 17:59 172M 
[TXT]scaffolds.FINAL_asm.scaffold_track.txt2021-03-01 17:38 5.8M 
[TXT]scaffolds.FINAL_asm.superscaf_track.txt2021-03-01 17:38 3.5M 
[ ]scaffolds.cprops2021-03-01 05:56 1.8M 
[TXT]scaffolds.edits.txt2021-03-01 13:14 81K 
[ ]scaffolds.final.asm2021-03-01 17:04 237K 
[ ]scaffolds.final.assembly2021-03-01 17:09 2.1M 
[ ]scaffolds.final.cprops2021-03-01 17:04 1.9M 
[ ]scaffolds.final.fasta2021-03-01 17:30 68M 
[ ]scaffolds.final.hic2021-03-01 17:29 168M 
[ ]scaffolds.polished.asm2021-03-01 16:08 238K 
[ ]scaffolds.polished.cprops2021-03-01 16:02 1.9M 
[ ]scaffolds.polished.depletion_score_narrow.wig2021-03-01 16:02 918K 
[ ]scaffolds.polished.depletion_score_wide.wig2021-03-01 15:58 10K 
[TXT]scaffolds.polished.edits_2D.txt2021-03-01 16:02 368  
[ ]scaffolds.polished.hic2021-03-01 16:32 168M 
[ ]scaffolds.polished.mismatch_narrow.bed2021-03-01 16:02 212  
[ ]scaffolds.polished.mismatch_wide.bed2021-03-01 15:58 211  
[TXT]scaffolds.polished.mismatches_2D.txt2021-03-01 16:02 1.5K 
[ ]scaffolds.polished.split.assembly2021-03-01 16:42 2.1M 
[ ]scaffolds.polished.split.depletion_score_narrow.wig2021-03-01 16:37 918K 
[ ]scaffolds.polished.split.depletion_score_wide.wig2021-03-01 16:32 10K 
[TXT]scaffolds.polished.split.edits_2D.txt2021-03-01 16:37 47  
[ ]scaffolds.polished.split.mismatch_narrow.bed2021-03-01 16:37 214  
[ ]scaffolds.polished.split.mismatch_wide.bed2021-03-01 16:32 215  
[TXT]scaffolds.polished.split.mismatches_2D.txt2021-03-01 16:37 1.6K 
[TXT]scaffolds.polished.split.suspicious_2D.txt2021-03-01 16:37 1.6K 
[TXT]scaffolds.polished.suspect_2D.txt2021-03-01 16:02 1.8K 
[TXT]scaffolds.polished_asm.scaffold_track.txt2021-03-01 16:11 5.8M 
[TXT]scaffolds.polished_asm.superscaf_track.txt2021-03-01 16:11 3.5M 
[ ]scaffolds.rawchrom.asm2021-03-01 17:04 237K 
[ ]scaffolds.rawchrom.assembly2021-03-01 17:09 2.1M 
[ ]scaffolds.rawchrom.cprops2021-03-01 17:04 1.9M 
[ ]scaffolds.rawchrom.fasta2021-03-01 17:30 68M 
[ ]scaffolds.rawchrom.hic2021-03-01 17:29 168M 
[TXT]scaffolds.rawchrom_asm.scaffold_track.txt2021-03-01 17:09 5.8M 
[TXT]scaffolds.rawchrom_asm.superscaf_track.txt2021-03-01 17:09 3.5M 
[ ]scaffolds.resolved.asm2021-03-01 15:33 238K 
[ ]scaffolds.resolved.cprops2021-03-01 13:14 1.9M 
[ ]scaffolds.resolved.hic2021-03-01 15:57 168M 
[ ]scaffolds.resolved.polish.assembly2021-03-01 16:11 2.1M 
[TXT]scaffolds.resolved_asm.scaffold_track.txt2021-03-01 15:36 5.8M 
[TXT]scaffolds.resolved_asm.superscaf_track.txt2021-03-01 15:36 3.5M 
[ ]scaffolds.split.asm2021-03-01 16:39 238K 
[ ]scaffolds.split.assembly2021-03-01 17:04 2.1M 
[ ]scaffolds.split.cprops2021-03-01 16:37 1.9M 
[ ]scaffolds.split.hic2021-03-01 17:04 168M 
[TXT]scaffolds.split_asm.scaffold_track.txt2021-03-01 16:42 5.8M 
[TXT]scaffolds.split_asm.superscaf_track.txt2021-03-01 16:42 3.5M 
[DIR]seal/2021-02-25 12:54 -  
[DIR]split/2021-02-25 12:54 -  
[DIR]split_chrom_aware/2021-02-25 12:54 -  
[DIR]supp/2021-02-25 12:54 -  
[ ]suspect.at.step.0.bed2021-03-01 10:19 5.2K 
[ ]suspect.at.step.1.bed2021-03-01 13:14 3.8K 
[TXT]suspect_2D.at.step.0.txt2021-03-01 10:19 76K 
[TXT]suspect_2D.at.step.1.txt2021-03-01 13:14 15K 
[DIR]utils/2021-02-25 12:54 -  
[DIR]visualize/2022-02-08 17:14 -  
[ ]z2021-02-25 12:54 372  
[ ]zL1621-3D.1.err2021-03-01 17:35 17K 
[ ]zL1621-3D.1.out2021-03-01 17:59 27K 
[ ]zL1621-3D.1.sbatch2021-03-01 05:48 576  
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