Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1523-Killifish-Hi-C-additional_reads-juicer-2021-01-30 -d /srv/scratch/marinovg/juicer-L1523-Killifish-Hi-C-additional_reads-juicer-2021-01-30 -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Fishes/Nothobranchius_furzeri-Nfu_20140520/GCA_001465895.2_Nfu_20140520_genomic.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Fishes/Nothobranchius_furzeri-Nfu_20140520/bwa-indexes/GCA_001465895.2_Nfu_20140520_genomic.fa                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  814,717,494
 Normal Paired: 501,919,636 (61.61%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 312,797,858 (38.39%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 501,919,636 (61.61%)
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 229,038,384 (28.11% / 60.59%)
Hi-C Contacts: 148,950,064 (18.28% / 39.41%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 57,778,381  (7.09% / 15.29%)
Intra-chromosomal: 91,171,683  (11.19% / 24.12%)
Short Range (<20Kb): 33,167,238  (4.07% / 8.77%)
Long Range (>20Kb): 57,998,955  (7.12% / 15.34%)