Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2020-06-12-NextSeq-run/juicer-L1520-Symbiodinium_0h-Hi-C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-all_reads -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2020-06-12-NextSeq-run/juicer-L1520-Symbiodinium_0h-Hi-C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-all_reads -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta
Sequenced Read Pairs:  43,496,236
 Normal Paired: 25,929,832 (59.61%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 17,566,404 (40.39%)
 Ligation Motif Present: 6,841,359 (15.73%)
Alignable (Normal+Chimeric Paired): 25,929,832 (59.61%)
Unique Reads: 24,705,786 (56.80%)
PCR Duplicates: 1,212,748 (2.79%)
Optical Duplicates: 11,298 (0.03%)
Library Complexity Estimate: 268,253,452
Intra-fragment Reads: 2,198,896 (5.06% / 8.90%)
Below MAPQ Threshold: 9,117,475 (20.96% / 36.90%)
Hi-C Contacts: 13,389,415 (30.78% / 54.20%)
 Ligation Motif Present: 674,054  (1.55% / 2.73%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 9,499,016  (21.84% / 38.45%)
Intra-chromosomal: 3,890,399  (8.94% / 15.75%)
Short Range (<20Kb): 1,743,480  (4.01% / 7.06%)
Long Range (>20Kb): 2,146,890  (4.94% / 8.69%)