Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2020-06-12-NextSeq-run/juicer-L1520-Symbiodinium_0h-Hi-C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-all_reads -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2020-06-12-NextSeq-run/juicer-L1520-Symbiodinium_0h-Hi-C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-all_reads -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta
Sequenced Read Pairs:  43,496,236
 Normal Paired: 25,929,832 (59.61%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 17,566,404 (40.39%)
 Ligation Motif Present: 6,841,359 (15.73%)
Alignable (Normal+Chimeric Paired): 25,929,832 (59.61%)
Unique Reads: 24,705,786 (56.80%)
PCR Duplicates: 1,212,748 (2.79%)
Optical Duplicates: 11,298 (0.03%)
Library Complexity Estimate: 268,253,452
Intra-fragment Reads: 2,198,896 (5.06% / 8.90%)
Below MAPQ Threshold: 7,000,327 (16.09% / 28.33%)
Hi-C Contacts: 15,506,563 (35.65% / 62.76%)
 Ligation Motif Present: 780,437  (1.79% / 3.16%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 11,207,192  (25.77% / 45.36%)
Intra-chromosomal: 4,299,371  (9.88% / 17.40%)
Short Range (<20Kb): 1,892,699  (4.35% / 7.66%)
Long Range (>20Kb): 2,406,636  (5.53% / 9.74%)