Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-01-31-pooled-reruns/juicer-L1520-Symbiodinium_0h-Hi-C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-01-31-pooled-reruns/juicer-L1520-Symbiodinium_0h-Hi-C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                      
Sequenced Read Pairs:  43,496,236
 Normal Paired: 25,929,832 (59.61%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 17,566,404 (40.39%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 25,929,832 (59.61%)
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 7,185,319 (16.52% / 29.06%)
Hi-C Contacts: 17,538,043 (40.32% / 70.94%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 11,207,132  (25.77% / 45.33%)
Intra-chromosomal: 6,330,911  (14.56% / 25.61%)
Short Range (<20Kb): 3,921,519  (9.02% / 15.86%)
Long Range (>20Kb): 2,406,582  (5.53% / 9.73%)