Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-02-20-NextSeq-run/juicer-L1468-Aiptasia_Symbiodinium_Hi-C-Aiptasia -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-02-20-NextSeq-run/juicer-L1468-Aiptasia_Symbiodinium_Hi-C-Aiptasia -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/GCA_001417965.1_Aiptasia_genome_1.1_genomic.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/Aiptasia_pallida-1.1_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fa                                                                                                                                                                                                        
Sequenced Read Pairs:  16,733,545
 Normal Paired: 11,541,066 (68.97%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 5,192,479 (31.03%)
 Ligation Motif Present: 8,642 (0.05%)
Alignable (Normal+Chimeric Paired): 11,541,066 (68.97%)
Unique Reads: 8,724,069 (52.14%)
PCR Duplicates: 2,814,785 (16.82%)
Optical Duplicates: 2,212 (0.01%)
Library Complexity Estimate: 19,623,981
Intra-fragment Reads: 4,746,763 (28.37% / 54.41%)
Below MAPQ Threshold: 2,954,418 (17.66% / 33.87%)
Hi-C Contacts: 1,022,888 (6.11% / 11.72%)
 Ligation Motif Present: 2,941  (0.02% / 0.03%)
 3' Bias (Long Range): 45% - 55%
 Pair Type %(L-I-O-R): 12% - 39% - 37% - 12%
Inter-chromosomal: 31,866  (0.19% / 0.37%)
Intra-chromosomal: 991,022  (5.92% / 11.36%)
Short Range (<20Kb): 990,066  (5.92% / 11.35%)
Long Range (>20Kb): 950  (0.01% / 0.01%)