Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 20 threads; java version "1.8.0_40"; scripts/juicer.sh -t 20 -D /users/marinovg/Symbiodinium/2018-03-25-NextSeq-run/juicer-L142 -d /users/marinovg/Symbiodinium/2018-03-25-NextSeq-run/juicer-L142 -p /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/bwa-indexes/symbB.v1.0.genome.fa                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  456,828,866
 Normal Paired: 341,996,769 (74.86%)
 Chimeric Paired: 31,190,942 (6.83%)
 Chimeric Ambiguous: 8,471,585 (1.85%)
 Unmapped: 75,169,570 (16.45%)
 Ligation Motif Present: 162,736,781 (35.62%)
Alignable (Normal+Chimeric Paired): 373,187,711 (81.69%)
Unique Reads: 306,035,071 (66.99%)
PCR Duplicates: 66,035,391 (14.46%)
Optical Duplicates: 1,117,249 (0.24%)
Library Complexity Estimate: 920,112,029
Intra-fragment Reads: 26,280,400 (5.75% / 8.59%)
Below MAPQ Threshold: 58,846,209 (12.88% / 19.23%)
Hi-C Contacts: 220,908,462 (48.36% / 72.18%)
 Ligation Motif Present: 80,814,918  (17.69% / 26.41%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 158,415,929  (34.68% / 51.76%)
Intra-chromosomal: 62,492,533  (13.68% / 20.42%)
Short Range (<20Kb): 60,844,205  (13.32% / 19.88%)
Long Range (>20Kb): 1,647,874  (0.36% / 0.54%)