#!/bin/bash
#SBATCH --job-name=zL1355-1
#SBATCH --output=zL1355.1.out
#SBATCH --error=zL1355.1.err
#SBATCH --time=160:00:00
#SBATCH -p akundaje,sfgf
#SBATCH --cpus-per-task=16
#SBATCH --mem=100000
export PATH=/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.17:$PATH; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2021-05-15-NextSeq-run/juicer-L1355-Phaeodactylum_tricoturnum-HiC-MboI_MluCI-all_reads -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2021-05-15-NextSeq-run/juicer-L1355-Phaeodactylum_tricoturnum-HiC-MboI_MluCI-all_reads -p /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Phaeodactylum_tricornutum-ASM15095v2/Phaeodactylum_tricornutum.ASM15095v2.20+chrM.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Phaeodactylum_tricornutum-ASM15095v2/bwa-indexes/Phaeodactylum_tricornutum.ASM15095v2.20+chrM.fa