#!/bin/bash
#SBATCH --job-name=zPT-3D-r10-1
#SBATCH --output=zPT-3D-r10.1.out
#SBATCH --error=zPT-3D-r10.1.err
#SBATCH --time=160:00:00
#SBATCH -p akundaje,sfgf
#SBATCH --cpus-per-task=16
#SBATCH --mem=100000
./run-asm-pipeline.sh --rounds 10 --sort-output --build-gapped-map -i 1000 /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Phaeodactylum_tricornutum-ASM15095v2/bwa-indexes/Phaeodactylum_tricornutum.ASM15095v2.20+chrM.fa //oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2021-05-15-NextSeq-run/juicer-L1355-L1109-merged/mega/aligned/merged_nodups.txt