Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-01-20-NextSeq-run/juicer-L1354-Aiptasia_Sym-HiC-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-01-20-NextSeq-run/juicer-L1354-Aiptasia_Sym-HiC-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                
Sequenced Read Pairs:  76,198,521
 Normal Paired: 2,111,276 (2.77%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 74,087,245 (97.23%)
 Ligation Motif Present: 36,984 (0.05%)
Alignable (Normal+Chimeric Paired): 2,111,276 (2.77%)
Unique Reads: 1,617,089 (2.12%)
PCR Duplicates: 493,929 (0.65%)
Optical Duplicates: 258 (0.00%)
Library Complexity Estimate: 3,775,987
Intra-fragment Reads: 1,033,105 (1.36% / 63.89%)
Below MAPQ Threshold: 338,929 (0.44% / 20.96%)
Hi-C Contacts: 245,055 (0.32% / 15.15%)
 Ligation Motif Present: 671  (0.00% / 0.04%)
 3' Bias (Long Range): 40% - 60%
 Pair Type %(L-I-O-R): 23% - 26% - 28% - 23%
Inter-chromosomal: 3,485  (0.00% / 0.22%)
Intra-chromosomal: 241,570  (0.32% / 14.94%)
Short Range (<20Kb): 240,612  (0.32% / 14.88%)
Long Range (>20Kb): 958  (0.00% / 0.06%)