Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-01-20-NextSeq-run/juicer-L1354-Aiptasia_Sym-HiC-Aiptasia -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-01-20-NextSeq-run/juicer-L1354-Aiptasia_Sym-HiC-Aiptasia -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/GCA_001417965.1_Aiptasia_genome_1.1_genomic.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/Aiptasia_pallida-1.1_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fa                                                                                                                                                                                                                            
Sequenced Read Pairs:  76,198,521
 Normal Paired: 52,999,465 (69.55%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 23,199,056 (30.45%)
 Ligation Motif Present: 36,984 (0.05%)
Alignable (Normal+Chimeric Paired): 52,999,465 (69.55%)
Unique Reads: 34,274,581 (44.98%)
PCR Duplicates: 18,717,483 (24.56%)
Optical Duplicates: 7,401 (0.01%)
Library Complexity Estimate: 56,051,754
Intra-fragment Reads: 18,539,952 (24.33% / 54.09%)
Below MAPQ Threshold: 12,026,907 (15.78% / 35.09%)
Hi-C Contacts: 3,707,722 (4.87% / 10.82%)
 Ligation Motif Present: 9,858  (0.01% / 0.03%)
 3' Bias (Long Range): 42% - 58%
 Pair Type %(L-I-O-R): 13% - 37% - 37% - 13%
Inter-chromosomal: 175,844  (0.23% / 0.51%)
Intra-chromosomal: 3,531,878  (4.64% / 10.30%)
Short Range (<20Kb): 3,528,277  (4.63% / 10.29%)
Long Range (>20Kb): 3,593  (0.00% / 0.01%)