Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-01-20-NextSeq-run/juicer-L1333-SSB01-a_amanitin-48h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-01-20-NextSeq-run/juicer-L1333-SSB01-a_amanitin-48h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta    
Sequenced Read Pairs:  81,447,736
 Normal Paired: 59,782,816 (73.40%)
 Chimeric Paired: 3,375,087 (4.14%)
 Chimeric Ambiguous: 1,366,177 (1.68%)
 Unmapped: 16,923,656 (20.78%)
 Ligation Motif Present: 6,810,199 (8.36%)
Alignable (Normal+Chimeric Paired): 63,157,903 (77.54%)
Unique Reads: 42,566,706 (52.26%)
PCR Duplicates: 20,573,529 (25.26%)
Optical Duplicates: 17,668 (0.02%)
Library Complexity Estimate: 74,443,346
Intra-fragment Reads: 11,885,421 (14.59% / 27.92%)
Below MAPQ Threshold: 10,899,862 (13.38% / 25.61%)
Hi-C Contacts: 19,781,423 (24.29% / 46.47%)
 Ligation Motif Present: 2,431,401  (2.99% / 5.71%)
 3' Bias (Long Range): 60% - 40%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 9,625,400  (11.82% / 22.61%)
Intra-chromosomal: 10,156,023  (12.47% / 23.86%)
Short Range (<20Kb): 8,219,059  (10.09% / 19.31%)
Long Range (>20Kb): 1,936,888  (2.38% / 4.55%)