Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-02-01-NextSeq-run/juicer-L1333-SSB01-a_amanitin-48h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-all_reads -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-02-01-NextSeq-run/juicer-L1333-SSB01-a_amanitin-48h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-all_reads -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta
Sequenced Read Pairs:  117,821,773
 Normal Paired: 83,598,340 (70.95%)
 Chimeric Paired: 3,375,087 (2.86%)
 Chimeric Ambiguous: 1,366,177 (1.16%)
 Unmapped: 29,482,169 (25.02%)
 Ligation Motif Present: 7,830,689 (6.65%)
Alignable (Normal+Chimeric Paired): 86,973,427 (73.82%)
Unique Reads: 53,813,180 (45.67%)
PCR Duplicates: 33,141,079 (28.13%)
Optical Duplicates: 19,168 (0.02%)
Library Complexity Estimate: 82,740,021
Intra-fragment Reads: 14,353,144 (12.18% / 26.67%)
Below MAPQ Threshold: 15,805,276 (13.41% / 29.37%)
Hi-C Contacts: 23,654,760 (20.08% / 43.96%)
 Ligation Motif Present: 2,205,371  (1.87% / 4.10%)
 3' Bias (Long Range): 60% - 40%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 11,676,163  (9.91% / 21.70%)
Intra-chromosomal: 11,978,597  (10.17% / 22.26%)
Short Range (<20Kb): 9,662,092  (8.20% / 17.95%)
Long Range (>20Kb): 2,316,417  (1.97% / 4.30%)