Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-01-20-NextSeq-run/juicer-L1332-SSB01-a_amanitin-0h-Hi-C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-01-20-NextSeq-run/juicer-L1332-SSB01-a_amanitin-0h-Hi-C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                
Sequenced Read Pairs:  50,829,756
 Normal Paired: 37,723,529 (74.22%)
 Chimeric Paired: 2,357,776 (4.64%)
 Chimeric Ambiguous: 900,492 (1.77%)
 Unmapped: 9,847,959 (19.37%)
 Ligation Motif Present: 8,746,904 (17.21%)
Alignable (Normal+Chimeric Paired): 40,081,305 (78.85%)
Unique Reads: 34,460,229 (67.80%)
PCR Duplicates: 5,603,323 (11.02%)
Optical Duplicates: 17,753 (0.03%)
Library Complexity Estimate: 129,535,007
Intra-fragment Reads: 7,935,275 (15.61% / 23.03%)
Below MAPQ Threshold: 10,563,669 (20.78% / 30.65%)
Hi-C Contacts: 15,961,285 (31.40% / 46.32%)
 Ligation Motif Present: 3,970,472  (7.81% / 11.52%)
 3' Bias (Long Range): 68% - 32%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 7,008,642  (13.79% / 20.34%)
Intra-chromosomal: 8,952,643  (17.61% / 25.98%)
Short Range (<20Kb): 6,325,095  (12.44% / 18.35%)
Long Range (>20Kb): 2,627,515  (5.17% / 7.62%)