Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-01-31-pooled-reruns/juicer-L1332-SSB01-a_amanitin-0h-Hi-C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-01-31-pooled-reruns/juicer-L1332-SSB01-a_amanitin-0h-Hi-C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta              
Sequenced Read Pairs:  549,347,830
 Normal Paired: 338,009,741 (61.53%)
 Chimeric Paired: 2,537,930 (0.46%)
 Chimeric Ambiguous: 652,302 (0.12%)
 Unmapped: 208,147,857 (37.89%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 340,547,671 (61.99%)
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 69,321,334 (12.62% / 37.10%)
Hi-C Contacts: 117,521,684 (21.39% / 62.90%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 43,073,422  (7.84% / 23.05%)
Intra-chromosomal: 74,448,262  (13.55% / 39.85%)
Short Range (<20Kb): 59,815,340  (10.89% / 32.01%)
Long Range (>20Kb): 14,617,472  (2.66% / 7.82%)