Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-12-13-NextSeq-run/juicer-L1331-Aureococcus_anophagefferens_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-12-13-NextSeq-run/juicer-L1331-Aureococcus_anophagefferens_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Pelagophyta/Aureococcus_anophagefferens-v1.0/GCA_000186865.1_v_1.0_genomic+chrM+chrC.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Pelagophyta/Aureococcus_anophagefferens-v1.0/bwa-indexes/GCA_000186865.1_v_1.0_genomic+chrM+chrC_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Pelagophyta/Aureococcus_anophagefferens-v1.0/bwa-indexes/GCA_000186865.1_v_1.0_genomic+chrM+chrC.fa                                                                                                                                                                              
Sequenced Read Pairs:  16,704,549
 Normal Paired: 10,348,518 (61.95%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 6,356,031 (38.05%)
 Ligation Motif Present: 3,532,721 (21.15%)
Alignable (Normal+Chimeric Paired): 10,348,518 (61.95%)
Unique Reads: 10,220,396 (61.18%)
PCR Duplicates: 122,027 (0.73%)
Optical Duplicates: 6,095 (0.04%)
Library Complexity Estimate: 434,832,777
Intra-fragment Reads: 40,918 (0.24% / 0.40%)
Below MAPQ Threshold: 3,236,483 (19.37% / 31.67%)
Hi-C Contacts: 6,942,995 (41.56% / 67.93%)
 Ligation Motif Present: 337,286  (2.02% / 3.30%)
 3' Bias (Long Range): 79% - 21%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 3,594,605  (21.52% / 35.17%)
Intra-chromosomal: 3,348,390  (20.04% / 32.76%)
Short Range (<20Kb): 1,883,922  (11.28% / 18.43%)
Long Range (>20Kb): 1,464,445  (8.77% / 14.33%)