Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1246-SSB01-a_amanitin-48h-Hi-C-rep2-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg/juicer-L1246-SSB01-a_amanitin-48h-Hi-C-rep2-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                
Sequenced Read Pairs:  78,982,528
 Normal Paired: 51,911,474 (65.73%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 27,071,054 (34.27%)
 Ligation Motif Present: 2,169,960 (2.75%)
Alignable (Normal+Chimeric Paired): 51,911,474 (65.73%)
Unique Reads: 43,995,721 (55.70%)
PCR Duplicates: 7,898,229 (10.00%)
Optical Duplicates: 17,524 (0.02%)
Library Complexity Estimate: 152,703,652
Intra-fragment Reads: 10,204,996 (12.92% / 23.20%)
Below MAPQ Threshold: 15,181,741 (19.22% / 34.51%)
Hi-C Contacts: 18,608,984 (23.56% / 42.30%)
 Ligation Motif Present: 175,480  (0.22% / 0.40%)
 3' Bias (Long Range): 62% - 38%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 8,163,011  (10.34% / 18.55%)
Intra-chromosomal: 10,445,973  (13.23% / 23.74%)
Short Range (<20Kb): 8,597,047  (10.88% / 19.54%)
Long Range (>20Kb): 1,848,880  (2.34% / 4.20%)