Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1245-SSB01-a_amanitin-48h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg/juicer-L1245-SSB01-a_amanitin-48h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                
Sequenced Read Pairs:  90,180,763
 Normal Paired: 57,908,666 (64.21%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 32,272,097 (35.79%)
 Ligation Motif Present: 4,719,020 (5.23%)
Alignable (Normal+Chimeric Paired): 57,908,666 (64.21%)
Unique Reads: 48,307,895 (53.57%)
PCR Duplicates: 9,577,507 (10.62%)
Optical Duplicates: 23,264 (0.03%)
Library Complexity Estimate: 155,046,434
Intra-fragment Reads: 7,236,193 (8.02% / 14.98%)
Below MAPQ Threshold: 18,713,343 (20.75% / 38.74%)
Hi-C Contacts: 22,358,359 (24.79% / 46.28%)
 Ligation Motif Present: 364,459  (0.40% / 0.75%)
 3' Bias (Long Range): 67% - 33%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 11,560,468  (12.82% / 23.93%)
Intra-chromosomal: 10,797,891  (11.97% / 22.35%)
Short Range (<20Kb): 7,070,436  (7.84% / 14.64%)
Long Range (>20Kb): 3,727,360  (4.13% / 7.72%)