Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1245-SSB01-a_amanitin-48h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg/juicer-L1245-SSB01-a_amanitin-48h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                
Sequenced Read Pairs:  90,180,763
 Normal Paired: 57,908,666 (64.21%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 32,272,097 (35.79%)
 Ligation Motif Present: 4,719,020 (5.23%)
Alignable (Normal+Chimeric Paired): 57,908,666 (64.21%)
Unique Reads: 48,307,895 (53.57%)
PCR Duplicates: 9,577,507 (10.62%)
Optical Duplicates: 23,264 (0.03%)
Library Complexity Estimate: 155,046,434
Intra-fragment Reads: 7,236,193 (8.02% / 14.98%)
Below MAPQ Threshold: 14,026,359 (15.55% / 29.04%)
Hi-C Contacts: 27,045,343 (29.99% / 55.99%)
 Ligation Motif Present: 443,538  (0.49% / 0.92%)
 3' Bias (Long Range): 66% - 34%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 14,627,900  (16.22% / 30.28%)
Intra-chromosomal: 12,417,443  (13.77% / 25.70%)
Short Range (<20Kb): 7,996,822  (8.87% / 16.55%)
Long Range (>20Kb): 4,420,494  (4.90% / 9.15%)