Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1245-SSB01-a_amanitin-48h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -d /srv/scratch/marinovg/juicer-L1245-SSB01-a_amanitin-48h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                      
Sequenced Read Pairs:  73,354,735
 Normal Paired: 47,103,716 (64.21%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 26,251,019 (35.79%)
 Ligation Motif Present: 3,838,615 (5.23%)
Alignable (Normal+Chimeric Paired): 47,103,716 (64.21%)
Unique Reads: 40,355,963 (55.01%)
PCR Duplicates: 6,732,157 (9.18%)
Optical Duplicates: 15,596 (0.02%)
Library Complexity Estimate: 148,577,486
Intra-fragment Reads: 6,026,591 (8.22% / 14.93%)
Below MAPQ Threshold: 11,773,698 (16.05% / 29.17%)
Hi-C Contacts: 22,555,674 (30.75% / 55.89%)
 Ligation Motif Present: 370,050  (0.50% / 0.92%)
 3' Bias (Long Range): 66% - 34%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 12,195,662  (16.63% / 30.22%)
Intra-chromosomal: 10,360,012  (14.12% / 25.67%)
Short Range (<20Kb): 6,669,032  (9.09% / 16.53%)
Long Range (>20Kb): 3,690,869  (5.03% / 9.15%)