Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1244-SSB01-a_amanitin-24h-Hi-C-rep2-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg/juicer-L1244-SSB01-a_amanitin-24h-Hi-C-rep2-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                
Sequenced Read Pairs:  106,381,220
 Normal Paired: 67,201,838 (63.17%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 39,179,382 (36.83%)
 Ligation Motif Present: 4,504,685 (4.23%)
Alignable (Normal+Chimeric Paired): 67,201,838 (63.17%)
Unique Reads: 50,345,966 (47.33%)
PCR Duplicates: 16,825,198 (15.82%)
Optical Duplicates: 30,674 (0.03%)
Library Complexity Estimate: 110,607,925
Intra-fragment Reads: 7,961,710 (7.48% / 15.81%)
Below MAPQ Threshold: 13,538,950 (12.73% / 26.89%)
Hi-C Contacts: 28,845,306 (27.12% / 57.29%)
 Ligation Motif Present: 366,283  (0.34% / 0.73%)
 3' Bias (Long Range): 65% - 35%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 13,249,756  (12.45% / 26.32%)
Intra-chromosomal: 15,595,550  (14.66% / 30.98%)
Short Range (<20Kb): 10,678,732  (10.04% / 21.21%)
Long Range (>20Kb): 4,916,732  (4.62% / 9.77%)