Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1244-SSB01-a_amanitin-24h-Hi-C-rep2-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -d /srv/scratch/marinovg/juicer-L1244-SSB01-a_amanitin-24h-Hi-C-rep2-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                      
Sequenced Read Pairs:  81,139,136
 Normal Paired: 51,253,112 (63.17%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 29,886,024 (36.83%)
 Ligation Motif Present: 3,436,384 (4.24%)
Alignable (Normal+Chimeric Paired): 51,253,112 (63.17%)
Unique Reads: 40,551,454 (49.98%)
PCR Duplicates: 10,683,351 (13.17%)
Optical Duplicates: 18,307 (0.02%)
Library Complexity Estimate: 105,106,299
Intra-fragment Reads: 6,343,341 (7.82% / 15.64%)
Below MAPQ Threshold: 14,709,532 (18.13% / 36.27%)
Hi-C Contacts: 19,498,581 (24.03% / 48.08%)
 Ligation Motif Present: 245,373  (0.30% / 0.61%)
 3' Bias (Long Range): 65% - 35%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 8,509,400  (10.49% / 20.98%)
Intra-chromosomal: 10,989,181  (13.54% / 27.10%)
Short Range (<20Kb): 7,601,016  (9.37% / 18.74%)
Long Range (>20Kb): 3,388,122  (4.18% / 8.36%)