Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1243-SSB01-a_amanitin-24h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -d /srv/scratch/marinovg/juicer-L1243-SSB01-a_amanitin-24h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                      
Sequenced Read Pairs:  60,295,960
 Normal Paired: 38,438,171 (63.75%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 21,857,789 (36.25%)
 Ligation Motif Present: 4,688,593 (7.78%)
Alignable (Normal+Chimeric Paired): 38,438,171 (63.75%)
Unique Reads: 35,330,968 (58.60%)
PCR Duplicates: 3,091,135 (5.13%)
Optical Duplicates: 16,068 (0.03%)
Library Complexity Estimate: 225,802,102
Intra-fragment Reads: 2,511,384 (4.17% / 7.11%)
Below MAPQ Threshold: 14,219,567 (23.58% / 40.25%)
Hi-C Contacts: 18,600,017 (30.85% / 52.65%)
 Ligation Motif Present: 338,928  (0.56% / 0.96%)
 3' Bias (Long Range): 67% - 33%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 10,609,752  (17.60% / 30.03%)
Intra-chromosomal: 7,990,265  (13.25% / 22.62%)
Short Range (<20Kb): 3,687,492  (6.12% / 10.44%)
Long Range (>20Kb): 4,302,710  (7.14% / 12.18%)