Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1243-SSB01-a_amanitin-24h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -d /srv/scratch/marinovg/juicer-L1243-SSB01-a_amanitin-24h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                      
Sequenced Read Pairs:  60,295,960
 Normal Paired: 38,438,171 (63.75%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 21,857,789 (36.25%)
 Ligation Motif Present: 4,688,593 (7.78%)
Alignable (Normal+Chimeric Paired): 38,438,171 (63.75%)
Unique Reads: 35,330,968 (58.60%)
PCR Duplicates: 3,091,135 (5.13%)
Optical Duplicates: 16,068 (0.03%)
Library Complexity Estimate: 225,802,102
Intra-fragment Reads: 2,511,384 (4.17% / 7.11%)
Below MAPQ Threshold: 10,306,401 (17.09% / 29.17%)
Hi-C Contacts: 22,513,183 (37.34% / 63.72%)
 Ligation Motif Present: 412,653  (0.68% / 1.17%)
 3' Bias (Long Range): 67% - 33%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 13,313,624  (22.08% / 37.68%)
Intra-chromosomal: 9,199,559  (15.26% / 26.04%)
Short Range (<20Kb): 4,173,556  (6.92% / 11.81%)
Long Range (>20Kb): 5,025,921  (8.34% / 14.23%)