Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1241-SSB01-a_amanitin-16h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg/juicer-L1241-SSB01-a_amanitin-16h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                
Sequenced Read Pairs:  60,696,609
 Normal Paired: 37,448,896 (61.70%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 23,247,713 (38.30%)
 Ligation Motif Present: 6,317,768 (10.41%)
Alignable (Normal+Chimeric Paired): 37,448,896 (61.70%)
Unique Reads: 35,302,915 (58.16%)
PCR Duplicates: 2,120,392 (3.49%)
Optical Duplicates: 25,589 (0.04%)
Library Complexity Estimate: 317,650,525
Intra-fragment Reads: 642,439 (1.06% / 1.82%)
Below MAPQ Threshold: 14,695,186 (24.21% / 41.63%)
Hi-C Contacts: 19,965,290 (32.89% / 56.55%)
 Ligation Motif Present: 439,615  (0.72% / 1.25%)
 3' Bias (Long Range): 68% - 32%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 13,309,306  (21.93% / 37.70%)
Intra-chromosomal: 6,655,984  (10.97% / 18.85%)
Short Range (<20Kb): 1,707,320  (2.81% / 4.84%)
Long Range (>20Kb): 4,948,598  (8.15% / 14.02%)