Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1241-SSB01-a_amanitin-16h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -d /srv/scratch/marinovg/juicer-L1241-SSB01-a_amanitin-16h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                      
Sequenced Read Pairs:  55,094,842
 Normal Paired: 33,993,499 (61.70%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 21,101,343 (38.30%)
 Ligation Motif Present: 5,735,267 (10.41%)
Alignable (Normal+Chimeric Paired): 33,993,499 (61.70%)
Unique Reads: 32,203,030 (58.45%)
PCR Duplicates: 1,769,333 (3.21%)
Optical Duplicates: 21,136 (0.04%)
Library Complexity Estimate: 314,720,665
Intra-fragment Reads: 585,943 (1.06% / 1.82%)
Below MAPQ Threshold: 13,410,446 (24.34% / 41.64%)
Hi-C Contacts: 18,206,641 (33.05% / 56.54%)
 Ligation Motif Present: 401,104  (0.73% / 1.25%)
 3' Bias (Long Range): 68% - 32%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 12,136,365  (22.03% / 37.69%)
Intra-chromosomal: 6,070,276  (11.02% / 18.85%)
Short Range (<20Kb): 1,557,517  (2.83% / 4.84%)
Long Range (>20Kb): 4,512,699  (8.19% / 14.01%)