Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1241-SSB01-a_amanitin-16h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -d /srv/scratch/marinovg/juicer-L1241-SSB01-a_amanitin-16h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                      
Sequenced Read Pairs:  55,094,842
 Normal Paired: 33,993,499 (61.70%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 21,101,343 (38.30%)
 Ligation Motif Present: 5,735,267 (10.41%)
Alignable (Normal+Chimeric Paired): 33,993,499 (61.70%)
Unique Reads: 32,203,030 (58.45%)
PCR Duplicates: 1,769,333 (3.21%)
Optical Duplicates: 21,136 (0.04%)
Library Complexity Estimate: 314,720,665
Intra-fragment Reads: 585,943 (1.06% / 1.82%)
Below MAPQ Threshold: 9,513,698 (17.27% / 29.54%)
Hi-C Contacts: 22,103,389 (40.12% / 68.64%)
 Ligation Motif Present: 487,694  (0.89% / 1.51%)
 3' Bias (Long Range): 68% - 32%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 15,073,737  (27.36% / 46.81%)
Intra-chromosomal: 7,029,652  (12.76% / 21.83%)
Short Range (<20Kb): 1,777,754  (3.23% / 5.52%)
Long Range (>20Kb): 5,251,814  (9.53% / 16.31%)