Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1240-SSB01-a_amanitin-0h-Hi-C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg/juicer-L1240-SSB01-a_amanitin-0h-Hi-C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                            
Sequenced Read Pairs:  111,333,226
 Normal Paired: 72,338,526 (64.97%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 38,994,700 (35.03%)
 Ligation Motif Present: 6,518,742 (5.86%)
Alignable (Normal+Chimeric Paired): 72,338,526 (64.97%)
Unique Reads: 62,187,451 (55.86%)
PCR Duplicates: 10,124,343 (9.09%)
Optical Duplicates: 26,732 (0.02%)
Library Complexity Estimate: 233,525,989
Intra-fragment Reads: 11,157,779 (10.02% / 17.94%)
Below MAPQ Threshold: 22,300,494 (20.03% / 35.86%)
Hi-C Contacts: 28,729,178 (25.80% / 46.20%)
 Ligation Motif Present: 479,572  (0.43% / 0.77%)
 3' Bias (Long Range): 67% - 33%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 13,977,420  (12.55% / 22.48%)
Intra-chromosomal: 14,751,758  (13.25% / 23.72%)
Short Range (<20Kb): 10,035,128  (9.01% / 16.14%)
Long Range (>20Kb): 4,716,559  (4.24% / 7.58%)