Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-01-31-pooled-reruns/juicer-L1240-SSB01-a_amanitin-0h-Hi-C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-01-31-pooled-reruns/juicer-L1240-SSB01-a_amanitin-0h-Hi-C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta              
Sequenced Read Pairs:  111,333,226
 Normal Paired: 72,421,945 (65.05%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 38,911,281 (34.95%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 72,421,945 (65.05%)
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 19,616,363 (17.62% / 30.10%)
Hi-C Contacts: 45,554,176 (40.92% / 69.90%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 18,032,167  (16.20% / 27.67%)
Intra-chromosomal: 27,522,009  (24.72% / 42.23%)
Short Range (<20Kb): 21,878,891  (19.65% / 33.57%)
Long Range (>20Kb): 5,637,882  (5.06% / 8.65%)