Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1240-SSB01-a_amanitin-0h-Hi-C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -d /srv/scratch/marinovg/juicer-L1240-SSB01-a_amanitin-0h-Hi-C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                  
Sequenced Read Pairs:  71,227,079
 Normal Paired: 46,279,014 (64.97%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 24,948,065 (35.03%)
 Ligation Motif Present: 4,169,013 (5.85%)
Alignable (Normal+Chimeric Paired): 46,279,014 (64.97%)
Unique Reads: 41,278,396 (57.95%)
PCR Duplicates: 4,989,537 (7.01%)
Optical Duplicates: 11,081 (0.02%)
Library Complexity Estimate: 198,804,039
Intra-fragment Reads: 7,387,126 (10.37% / 17.90%)
Below MAPQ Threshold: 14,936,173 (20.97% / 36.18%)
Hi-C Contacts: 18,955,097 (26.61% / 45.92%)
 Ligation Motif Present: 316,076  (0.44% / 0.77%)
 3' Bias (Long Range): 67% - 33%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 9,213,644  (12.94% / 22.32%)
Intra-chromosomal: 9,741,453  (13.68% / 23.60%)
Short Range (<20Kb): 6,630,050  (9.31% / 16.06%)
Long Range (>20Kb): 3,111,355  (4.37% / 7.54%)