Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-11-16-NextSeq-run/juicer-L1201-Thalassiosira_pseudonana_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-11-16-NextSeq-run/juicer-L1201-Thalassiosira_pseudonana_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Thalassiosira_pseudonana_v3.0/Thaps3.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Thalassiosira_pseudonana_v3.0/bwa-indexes/Thalassiosira_pseudonana_v3.0_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Thalassiosira_pseudonana_v3.0/bwa-indexes/Thaps3.fa                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  159,872,190
 Normal Paired: 20,159 (0.01%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 159,852,031 (99.99%)
 Ligation Motif Present: 38,196,362 (23.89%)
Alignable (Normal+Chimeric Paired): 20,159 (0.01%)
Unique Reads: 7,449 (0.00%)
PCR Duplicates: 12,709 (0.01%)
Optical Duplicates: 1 (0.00%)
Library Complexity Estimate: 8,130
Intra-fragment Reads: 294 (0.00% / 3.95%)
Below MAPQ Threshold: 7,074 (0.00% / 94.97%)
Hi-C Contacts: 81 (0.00% / 1.09%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 45% - 55%
 Pair Type %(L-I-O-R): 0% - 0% - 0% - 100%
Inter-chromosomal: 17  (0.00% / 0.23%)
Intra-chromosomal: 64  (0.00% / 0.86%)
Short Range (<20Kb): 63  (0.00% / 0.85%)
Long Range (>20Kb): 1  (0.00% / 0.01%)