Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-01-23-Novogene-NovaSeq/juicer-L1201-Thalassiosira_pseudonana_Hi-C -y none -s none -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1362-Thalassiosria_sp._gDNA/SPAdes-3.14-L1362-Thalassiosria_sp._gDNA/scaffolds.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1362-Thalassiosria_sp._gDNA/SPAdes-3.14-L1362-Thalassiosria_sp._gDNA/bwa-indexes/scaffolds.fa                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  159,872,190
 Normal Paired: 54,822 (0.03%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 159,817,368 (99.97%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 54,822 (0.03%)
Unique Reads: 14,935 (0.01%)
PCR Duplicates: 39,885 (0.02%)
Optical Duplicates: 2 (0.00%)
Library Complexity Estimate: 15,369
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 11,530 (0.01% / 77.20%)
Hi-C Contacts: 3,405 (0.00% / 22.80%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 29% - 22% - 24%
Inter-chromosomal: 798  (0.00% / 5.34%)
Intra-chromosomal: 2,607  (0.00% / 17.46%)
Short Range (<20Kb): 2,448  (0.00% / 16.39%)
Long Range (>20Kb): 91  (0.00% / 0.61%)