Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-10-31-NextSeq-run/juicer-L1148-Ectocarpus_siliculosus_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-10-31-NextSeq-run/juicer-L1148-Ectocarpus_siliculosus_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Phaeophyta/Ectocarpus_siliculosus_Ec_32-ASM31002v1/GCA_000310025.1_ASM31002v1_genomic.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Phaeophyta/Ectocarpus_siliculosus_Ec_32-ASM31002v1/bwa-indexes/GCA_000310025.1_ASM31002v1_genomic_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Phaeophyta/Ectocarpus_siliculosus_Ec_32-ASM31002v1/bwa-indexes/GCA_000310025.1_ASM31002v1_genomic.fa                                                                                                                                                                                     
Sequenced Read Pairs:  348,137,198
 Normal Paired: 8,319,590 (2.39%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 339,817,608 (97.61%)
 Ligation Motif Present: 27,389,455 (7.87%)
Alignable (Normal+Chimeric Paired): 8,319,590 (2.39%)
Unique Reads: 7,502,947 (2.16%)
PCR Duplicates: 816,382 (0.23%)
Optical Duplicates: 261 (0.00%)
Library Complexity Estimate: 39,567,995
Intra-fragment Reads: 1,593,639 (0.46% / 21.24%)
Below MAPQ Threshold: 3,922,737 (1.13% / 52.28%)
Hi-C Contacts: 1,986,571 (0.57% / 26.48%)
 Ligation Motif Present: 22,330  (0.01% / 0.30%)
 3' Bias (Long Range): 61% - 39%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 620,509  (0.18% / 8.27%)
Intra-chromosomal: 1,366,062  (0.39% / 18.21%)
Short Range (<20Kb): 1,146,658  (0.33% / 15.28%)
Long Range (>20Kb): 219,392  (0.06% / 2.92%)