Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-10-03-NextSeq-run/juicer-L1113-Haloferax_volcanii_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-10-03-NextSeq-run/juicer-L1113-Haloferax_volcanii_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_volcanii_DS2_uid46845/all.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_volcanii_DS2_uid46845/bwa-indexes/Haloferax_volcanii_DS2_uid46845_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_volcanii_DS2_uid46845/bwa-indexes/all.fa                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  37,343,963
 Normal Paired: 29,952,899 (80.21%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 7,391,064 (19.79%)
 Ligation Motif Present: 4,895,947 (13.11%)
Alignable (Normal+Chimeric Paired): 29,952,899 (80.21%)
Unique Reads: 27,276,954 (73.04%)
PCR Duplicates: 2,652,038 (7.10%)
Optical Duplicates: 23,907 (0.06%)
Library Complexity Estimate: 158,747,461
Intra-fragment Reads: 3,110,585 (8.33% / 11.40%)
Below MAPQ Threshold: 4,082,829 (10.93% / 14.97%)
Hi-C Contacts: 20,083,540 (53.78% / 73.63%)
 Ligation Motif Present: 749,387  (2.01% / 2.75%)
 3' Bias (Long Range): 91% - 9%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 9,096,487  (24.36% / 33.35%)
Intra-chromosomal: 10,987,053  (29.42% / 40.28%)
Short Range (<20Kb): 2,280,502  (6.11% / 8.36%)
Long Range (>20Kb): 8,706,508  (23.31% / 31.92%)