Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-10-03-NextSeq-run/juicer-L1112-Galdieria_sulphuraria_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-10-03-NextSeq-run/juicer-L1112-Galdieria_sulphuraria_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Rhodophyta/Galdieria_sulphuraria-ASM34128v1/GCA_000341285.1_ASM34128v1_genomic.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Rhodophyta/Galdieria_sulphuraria-ASM34128v1/bwa-indexes/GCA_000341285.1_ASM34128v1_genomic_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Rhodophyta/Galdieria_sulphuraria-ASM34128v1/bwa-indexes/GCA_000341285.1_ASM34128v1_genomic.fa                                                                                                                                                                                                            
Sequenced Read Pairs:  41,153,632
 Normal Paired: 28,168 (0.07%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 41,125,464 (99.93%)
 Ligation Motif Present: 2,606,584 (6.33%)
Alignable (Normal+Chimeric Paired): 28,168 (0.07%)
Unique Reads: 24,031 (0.06%)
PCR Duplicates: 4,120 (0.01%)
Optical Duplicates: 17 (0.00%)
Library Complexity Estimate: 86,542
Intra-fragment Reads: 4,217 (0.01% / 17.55%)
Below MAPQ Threshold: 2,904 (0.01% / 12.08%)
Hi-C Contacts: 16,910 (0.04% / 70.37%)
 Ligation Motif Present: 210  (0.00% / 0.87%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 23% - 25% - 25% - 27%
Inter-chromosomal: 546  (0.00% / 2.27%)
Intra-chromosomal: 16,364  (0.04% / 68.10%)
Short Range (<20Kb): 9,789  (0.02% / 40.73%)
Long Range (>20Kb): 6,575  (0.02% / 27.36%)