Index of /kundaje/marinovg/oak/ENCODE4/datasets-Hi-C/L1112-Galdieria_sulphuraria_Hi-C/juicer-L1112-Galdieria_sulphuraria_Hi-C-de-novo-assembly-3D_DNA

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]LICENSE2020-03-08 05:58 1.0K 
[TXT]README.md2020-03-08 05:58 8.7K 
[TXT]archive.scaffolds.edits.at.step.1.txt2020-03-08 06:16 98K 
[ ]coverage_wide.at.step.0.wig2020-03-08 06:13 87K 
[ ]coverage_wide.at.step.1.wig2020-03-08 06:16 86K 
[ ]depletion_score_narrow.at.step.0.wig2020-03-08 06:13 1.2M 
[ ]depletion_score_narrow.at.step.1.wig2020-03-08 06:16 1.2M 
[ ]depletion_score_wide.at.step.0.wig2020-03-08 06:13 39  
[ ]depletion_score_wide.at.step.1.wig2020-03-08 06:16 39  
[TXT]edits.for.step.1.txt2020-03-08 06:13 87K 
[TXT]edits.for.step.2.txt2020-03-08 06:16 1.5K 
[TXT]h.edits.txt2020-03-08 06:21 47  
[ ]mismatch_narrow.at.step.0.bed2020-03-08 06:13 11  
[ ]mismatch_narrow.at.step.1.bed2020-03-08 06:16 11  
[ ]mismatch_wide.at.step.0.bed2020-03-08 06:13 0  
[ ]mismatch_wide.at.step.1.bed2020-03-08 06:16 0  
[TXT]mismatches.at.step.0.txt2020-03-08 06:13 253  
[TXT]mismatches.at.step.1.txt2020-03-08 06:16 47  
[ ]repeats_wide.at.step.0.bed2020-03-08 06:13 12K 
[ ]repeats_wide.at.step.1.bed2020-03-08 06:16 12K 
[TXT]run-asm-pipeline-post-review.sh2020-03-08 05:58 11K 
[TXT]run-asm-pipeline.sh2020-03-08 05:58 44K 
[ ]scaffolds.0.asm2020-03-08 06:12 1.4M 
[ ]scaffolds.0.assembly2020-03-08 06:12 11M 
[ ]scaffolds.0.cprops2020-03-08 06:00 9.6M 
[ ]scaffolds.0.hic2020-03-08 06:13 13M 
[TXT]scaffolds.0_asm.scaffold_track.txt2020-03-08 06:12 31M 
[TXT]scaffolds.0_asm.superscaf_track.txt2020-03-08 06:12 22M 
[ ]scaffolds.1.asm2020-03-08 06:15 1.4M 
[ ]scaffolds.1.assembly2020-03-08 06:15 11M 
[ ]scaffolds.1.cprops2020-03-08 06:13 9.6M 
[ ]scaffolds.1.hic2020-03-08 06:16 13M 
[TXT]scaffolds.1_asm.scaffold_track.txt2020-03-08 06:15 31M 
[TXT]scaffolds.1_asm.superscaf_track.txt2020-03-08 06:15 22M 
[ ]scaffolds.2.asm2020-03-08 06:18 1.4M 
[ ]scaffolds.2.assembly2020-03-08 06:18 11M 
[ ]scaffolds.2.cprops2020-03-08 06:16 9.6M 
[ ]scaffolds.2.hic2020-03-08 06:19 13M 
[TXT]scaffolds.2_asm.scaffold_track.txt2020-03-08 06:18 31M 
[TXT]scaffolds.2_asm.superscaf_track.txt2020-03-08 06:18 22M 
[ ]scaffolds.FINAL.assembly2020-03-08 06:35 11M 
[ ]scaffolds.FINAL.fasta2020-03-08 06:35 120M 
[ ]scaffolds.FINAL.hic2020-03-08 06:36 14M 
[TXT]scaffolds.FINAL_asm.scaffold_track.txt2020-03-08 06:35 31M 
[TXT]scaffolds.FINAL_asm.superscaf_track.txt2020-03-08 06:35 22M 
[ ]scaffolds.cprops2020-03-08 06:00 9.6M 
[TXT]scaffolds.edits.txt2020-03-08 06:16 97K 
[ ]scaffolds.final.asm2020-03-08 06:22 1.4M 
[ ]scaffolds.final.assembly2020-03-08 06:22 11M 
[ ]scaffolds.final.cprops2020-03-08 06:21 9.7M 
[ ]scaffolds.final.fasta2020-03-08 06:23 122M 
[ ]scaffolds.final.hic2020-03-08 06:23 14M 
[ ]scaffolds.polished.asm2020-03-08 06:20 1.4M 
[ ]scaffolds.polished.cprops2020-03-08 06:19 9.7M 
[ ]scaffolds.polished.depletion_score_narrow.wig2020-03-08 06:19 1.2M 
[ ]scaffolds.polished.depletion_score_wide.wig2020-03-08 06:19 18K 
[TXT]scaffolds.polished.edits_2D.txt2020-03-08 06:19 87K 
[ ]scaffolds.polished.hic2020-03-08 06:21 13M 
[ ]scaffolds.polished.mismatch_narrow.bed2020-03-08 06:19 26K 
[ ]scaffolds.polished.mismatch_wide.bed2020-03-08 06:19 54  
[TXT]scaffolds.polished.mismatches_2D.txt2020-03-08 06:19 13K 
[ ]scaffolds.polished.split.assembly2020-03-08 06:21 11M 
[ ]scaffolds.polished.split.depletion_score_narrow.wig2020-03-08 06:21 1.2M 
[ ]scaffolds.polished.split.depletion_score_wide.wig2020-03-08 06:21 18K 
[TXT]scaffolds.polished.split.edits_2D.txt2020-03-08 06:21 47  
[ ]scaffolds.polished.split.mismatch_narrow.bed2020-03-08 06:21 26K 
[ ]scaffolds.polished.split.mismatch_wide.bed2020-03-08 06:21 54  
[TXT]scaffolds.polished.split.mismatches_2D.txt2020-03-08 06:21 47  
[TXT]scaffolds.polished.split.suspicious_2D.txt2020-03-08 06:21 47  
[TXT]scaffolds.polished.suspect_2D.txt2020-03-08 06:19 100K 
[TXT]scaffolds.polished_asm.scaffold_track.txt2020-03-08 06:20 31M 
[TXT]scaffolds.polished_asm.superscaf_track.txt2020-03-08 06:20 22M 
[ ]scaffolds.rawchrom.asm2020-03-08 06:22 1.4M 
[ ]scaffolds.rawchrom.assembly2020-03-08 06:22 11M 
[ ]scaffolds.rawchrom.cprops2020-03-08 06:21 9.7M 
[ ]scaffolds.rawchrom.fasta2020-03-08 06:23 122M 
[ ]scaffolds.rawchrom.hic2020-03-08 06:23 14M 
[TXT]scaffolds.rawchrom_asm.scaffold_track.txt2020-03-08 06:22 31M 
[TXT]scaffolds.rawchrom_asm.superscaf_track.txt2020-03-08 06:22 22M 
[ ]scaffolds.resolved.asm2020-03-08 06:18 1.4M 
[ ]scaffolds.resolved.cprops2020-03-08 06:16 9.6M 
[ ]scaffolds.resolved.hic2020-03-08 06:19 13M 
[ ]scaffolds.resolved.polish.assembly2020-03-08 06:20 11M 
[TXT]scaffolds.resolved_asm.scaffold_track.txt2020-03-08 06:18 31M 
[TXT]scaffolds.resolved_asm.superscaf_track.txt2020-03-08 06:18 22M 
[ ]scaffolds.split.asm2020-03-08 06:21 1.4M 
[ ]scaffolds.split.assembly2020-03-08 06:21 11M 
[ ]scaffolds.split.cprops2020-03-08 06:21 9.7M 
[TXT]scaffolds.split_asm.scaffold_track.txt2020-03-08 06:21 0  
[TXT]scaffolds.split_asm.superscaf_track.txt2020-03-08 06:21 22M 
[ ]suspect.at.step.0.bed2020-03-08 06:13 12K 
[ ]suspect.at.step.1.bed2020-03-08 06:16 12K 
[TXT]suspect_2D.at.step.0.txt2020-03-08 06:13 88K 
[TXT]suspect_2D.at.step.1.txt2020-03-08 06:16 1.5K 
[ ]z2020-03-08 05:58 375  
[ ]zL1112-3D.1.err2020-03-08 06:35 1.7K 
[ ]zL1112-3D.1.out2020-03-08 06:36 23K 
[ ]zL1112-3D.1.sbatch2020-03-08 05:58 579  
Apache/2.4.66 (Ubuntu) Server at mitra.stanford.edu Port 443