Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-10-03-NextSeq-run/juicer-L1109-Phaeodactylum_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-10-03-NextSeq-run/juicer-L1109-Phaeodactylum_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Phaeodactylum_tricornutum-ASM15095v2/Phaeodactylum_tricornutum.ASM15095v2.20+chrM.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Phaeodactylum_tricornutum-ASM15095v2/bwa-indexes/Phaeodactylum_tricornutum-ASM15095v2_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Phaeodactylum_tricornutum-ASM15095v2/bwa-indexes/Phaeodactylum_tricornutum.ASM15095v2.20+chrM.fa                                                                                                                                                                                                
Sequenced Read Pairs:  55,991,186
 Normal Paired: 36,404,779 (65.02%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 19,586,407 (34.98%)
 Ligation Motif Present: 7,930,109 (14.16%)
Alignable (Normal+Chimeric Paired): 36,404,779 (65.02%)
Unique Reads: 31,417,470 (56.11%)
PCR Duplicates: 4,972,054 (8.88%)
Optical Duplicates: 15,255 (0.03%)
Library Complexity Estimate: 120,735,789
Intra-fragment Reads: 1,538,600 (2.75% / 4.90%)
Below MAPQ Threshold: 8,909,799 (15.91% / 28.36%)
Hi-C Contacts: 20,969,071 (37.45% / 66.74%)
 Ligation Motif Present: 705,615  (1.26% / 2.25%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 9,735,598  (17.39% / 30.99%)
Intra-chromosomal: 11,233,473  (20.06% / 35.76%)
Short Range (<20Kb): 7,322,431  (13.08% / 23.31%)
Long Range (>20Kb): 3,911,013  (6.99% / 12.45%)