export PATH=/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.17:$PATH; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2021-05-15-NextSeq-run/juicer-L1109-Phaeodactylum_Hi-C-all_reads2 -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2021-05-15-NextSeq-run/juicer-L1109-Phaeodactylum_Hi-C-all_reads2 -p /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Phaeodactylum_tricornutum-ASM15095v2/Phaeodactylum_tricornutum.ASM15095v2.20+chrM.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Phaeodactylum_tricornutum-ASM15095v2/bwa-indexes/Phaeodactylum_tricornutum.ASM15095v2.20+chrM.fa &