Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2021-05-15-NextSeq-run/juicer-L1109-Phaeodactylum_Hi-C-all_reads2 -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2021-05-15-NextSeq-run/juicer-L1109-Phaeodactylum_Hi-C-all_reads2 -p /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Phaeodactylum_tricornutum-ASM15095v2/Phaeodactylum_tricornutum.ASM15095v2.20+chrM.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Phaeodactylum_tricornutum-ASM15095v2/bwa-indexes/Phaeodactylum_tricornutum.ASM15095v2.20+chrM.fa                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  544,110,128
 Normal Paired: 358,620,518 (65.91%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 185,489,610 (34.09%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 358,620,518 (65.91%)
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 75,807,526 (13.93% / 33.05%)
Hi-C Contacts: 153,590,813 (28.23% / 66.95%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 73,195,522  (13.45% / 31.91%)
Intra-chromosomal: 80,395,291  (14.78% / 35.05%)
Short Range (<20Kb): 51,182,508  (9.41% / 22.31%)
Long Range (>20Kb): 29,204,427  (5.37% / 12.73%)