Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-11-16-NextSeq-run/juicer-L1109-Phaeodactylum_Hi-C-all_reads -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-11-16-NextSeq-run/juicer-L1109-Phaeodactylum_Hi-C-all_reads -p /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Phaeodactylum_tricornutum-ASM15095v2/Phaeodactylum_tricornutum.ASM15095v2.20+chrM.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Phaeodactylum_tricornutum-ASM15095v2/bwa-indexes/Phaeodactylum_tricornutum-ASM15095v2_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Phaeodactylum_tricornutum-ASM15095v2/bwa-indexes/Phaeodactylum_tricornutum.ASM15095v2.20+chrM.fa                                                                                                                                                                            
Sequenced Read Pairs:  325,749,802
 Normal Paired: 212,831,224 (65.34%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 112,918,578 (34.66%)
 Ligation Motif Present: 44,212,761 (13.57%)
Alignable (Normal+Chimeric Paired): 212,831,224 (65.34%)
Unique Reads: 152,156,088 (46.71%)
PCR Duplicates: 60,610,916 (18.61%)
Optical Duplicates: 64,220 (0.02%)
Library Complexity Estimate: 298,521,219
Intra-fragment Reads: 5,455,513 (1.67% / 3.59%)
Below MAPQ Threshold: 46,790,780 (14.36% / 30.75%)
Hi-C Contacts: 99,909,795 (30.67% / 65.66%)
 Ligation Motif Present: 3,316,989  (1.02% / 2.18%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 49,021,300  (15.05% / 32.22%)
Intra-chromosomal: 50,888,495  (15.62% / 33.44%)
Short Range (<20Kb): 31,358,760  (9.63% / 20.61%)
Long Range (>20Kb): 19,529,554  (6.00% / 12.84%)