Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 40 threads; java version "1.8.0_131"; scripts/juicer.sh -t 40 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-10-03-NextSeq-run/juicer-L1107-Aiptasia_Sym_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-10-03-NextSeq-run/juicer-L1107-Aiptasia_Sym_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/GCA_001417965.1_Aiptasia_genome_1.1_genomic.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/Aiptasia_pallida-1.1_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fa                                                                                                                                                                                                                                            
Sequenced Read Pairs:  36,190,643
 Normal Paired: 7,318,017 (20.22%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 28,872,626 (79.78%)
 Ligation Motif Present: 53,739 (0.15%)
Alignable (Normal+Chimeric Paired): 7,318,017 (20.22%)
Unique Reads: 5,027,557 (13.89%)
PCR Duplicates: 2,289,891 (6.33%)
Optical Duplicates: 569 (0.00%)
Library Complexity Estimate: 9,098,228
Intra-fragment Reads: 2,520,235 (6.96% / 50.13%)
Below MAPQ Threshold: 1,941,886 (5.37% / 38.62%)
Hi-C Contacts: 565,436 (1.56% / 11.25%)
 Ligation Motif Present: 1,634  (0.00% / 0.03%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 11% - 42% - 34% - 13%
Inter-chromosomal: 17,039  (0.05% / 0.34%)
Intra-chromosomal: 548,397  (1.52% / 10.91%)
Short Range (<20Kb): 547,916  (1.51% / 10.90%)
Long Range (>20Kb): 478  (0.00% / 0.01%)