Index of /kundaje/marinovg/oak/ENCODE4/datasets-Hi-C/L1030-Nanochloropsis_oculata_Hi-C/juicer-L1030-Nanochloropsis_oculata_Hi-C-de-novo-assembly-3D_DNA

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]LICENSE2020-03-08 05:57 1.0K 
[TXT]README.md2020-03-08 05:57 8.7K 
[TXT]archive.scaffolds.edits.at.step.1.txt2020-03-08 09:11 579K 
[ ]coverage_wide.at.step.0.wig2020-03-08 08:32 118K 
[ ]coverage_wide.at.step.1.wig2020-03-08 09:11 118K 
[ ]depletion_score_narrow.at.step.0.wig2020-03-08 08:32 1.8M 
[ ]depletion_score_narrow.at.step.1.wig2020-03-08 09:11 1.8M 
[ ]depletion_score_wide.at.step.0.wig2020-03-08 08:31 39  
[ ]depletion_score_wide.at.step.1.wig2020-03-08 09:09 103K 
[TXT]edits.for.step.1.txt2020-03-08 08:32 525K 
[TXT]edits.for.step.2.txt2020-03-08 09:11 95K 
[TXT]h.edits.txt2020-03-08 10:06 162  
[ ]mismatch_narrow.at.step.0.bed2020-03-08 08:32 11  
[ ]mismatch_narrow.at.step.1.bed2020-03-08 09:11 48K 
[ ]mismatch_wide.at.step.0.bed2020-03-08 08:31 0  
[ ]mismatch_wide.at.step.1.bed2020-03-08 09:09 3.9K 
[TXT]mismatches.at.step.0.txt2020-03-08 08:32 796  
[TXT]mismatches.at.step.1.txt2020-03-08 09:11 29K 
[ ]repeats_wide.at.step.0.bed2020-03-08 08:32 1.6K 
[ ]repeats_wide.at.step.1.bed2020-03-08 09:11 1.3K 
[TXT]run-asm-pipeline-post-review.sh2020-03-08 05:57 11K 
[TXT]run-asm-pipeline.sh2020-03-08 05:57 44K 
[ ]scaffolds.0.asm2020-03-08 08:18 636K 
[ ]scaffolds.0.assembly2020-03-08 08:20 5.4M 
[ ]scaffolds.0.cprops2020-03-08 05:58 4.7M 
[ ]scaffolds.0.hic2020-03-08 08:31 87M 
[TXT]scaffolds.0_asm.scaffold_track.txt2020-03-08 08:20 16M 
[TXT]scaffolds.0_asm.superscaf_track.txt2020-03-08 08:20 10M 
[ ]scaffolds.1.asm2020-03-08 08:56 634K 
[ ]scaffolds.1.assembly2020-03-08 08:57 5.4M 
[ ]scaffolds.1.cprops2020-03-08 08:33 4.7M 
[ ]scaffolds.1.hic2020-03-08 09:09 96M 
[TXT]scaffolds.1_asm.scaffold_track.txt2020-03-08 08:57 16M 
[TXT]scaffolds.1_asm.superscaf_track.txt2020-03-08 08:57 11M 
[ ]scaffolds.2.asm2020-03-08 09:33 641K 
[ ]scaffolds.2.assembly2020-03-08 09:34 5.5M 
[ ]scaffolds.2.cprops2020-03-08 09:11 4.8M 
[ ]scaffolds.2.hic2020-03-08 09:45 96M 
[TXT]scaffolds.2_asm.scaffold_track.txt2020-03-08 09:34 16M 
[TXT]scaffolds.2_asm.superscaf_track.txt2020-03-08 09:34 11M 
[ ]scaffolds.FINAL.assembly2020-03-08 10:30 5.5M 
[ ]scaffolds.FINAL.fasta2020-03-08 10:30 158M 
[ ]scaffolds.FINAL.hic2020-03-08 10:43 97M 
[TXT]scaffolds.FINAL_asm.scaffold_track.txt2020-03-08 10:33 16M 
[TXT]scaffolds.FINAL_asm.superscaf_track.txt2020-03-08 10:33 11M 
[ ]scaffolds.cprops2020-03-08 05:58 4.7M 
[TXT]scaffolds.edits.txt2020-03-08 09:11 671K 
[ ]scaffolds.final.asm2020-03-08 10:08 640K 
[ ]scaffolds.final.assembly2020-03-08 10:11 5.5M 
[ ]scaffolds.final.cprops2020-03-08 10:08 4.8M 
[ ]scaffolds.final.fasta2020-03-08 10:21 158M 
[ ]scaffolds.final.hic2020-03-08 10:21 97M 
[ ]scaffolds.polished.asm2020-03-08 09:51 642K 
[ ]scaffolds.polished.cprops2020-03-08 09:48 4.8M 
[ ]scaffolds.polished.depletion_score_narrow.wig2020-03-08 09:47 1.9M 
[ ]scaffolds.polished.depletion_score_wide.wig2020-03-08 09:45 26K 
[TXT]scaffolds.polished.edits_2D.txt2020-03-08 09:47 4.4K 
[ ]scaffolds.polished.hic2020-03-08 10:03 96M 
[ ]scaffolds.polished.mismatch_narrow.bed2020-03-08 09:47 9.4K 
[ ]scaffolds.polished.mismatch_wide.bed2020-03-08 09:45 266  
[TXT]scaffolds.polished.mismatches_2D.txt2020-03-08 09:47 1.9K 
[ ]scaffolds.polished.split.assembly2020-03-08 10:08 5.5M 
[ ]scaffolds.polished.split.depletion_score_narrow.wig2020-03-08 10:05 1.9M 
[ ]scaffolds.polished.split.depletion_score_wide.wig2020-03-08 10:03 26K 
[TXT]scaffolds.polished.split.edits_2D.txt2020-03-08 10:05 154  
[ ]scaffolds.polished.split.mismatch_narrow.bed2020-03-08 10:05 9.5K 
[ ]scaffolds.polished.split.mismatch_wide.bed2020-03-08 10:03 241  
[TXT]scaffolds.polished.split.mismatches_2D.txt2020-03-08 10:05 2.4K 
[TXT]scaffolds.polished.split.suspicious_2D.txt2020-03-08 10:05 2.5K 
[TXT]scaffolds.polished.suspect_2D.txt2020-03-08 09:47 6.3K 
[TXT]scaffolds.polished_asm.scaffold_track.txt2020-03-08 09:53 16M 
[TXT]scaffolds.polished_asm.superscaf_track.txt2020-03-08 09:53 11M 
[ ]scaffolds.rawchrom.asm2020-03-08 10:08 640K 
[ ]scaffolds.rawchrom.assembly2020-03-08 10:11 5.5M 
[ ]scaffolds.rawchrom.cprops2020-03-08 10:08 4.8M 
[ ]scaffolds.rawchrom.fasta2020-03-08 10:21 158M 
[ ]scaffolds.rawchrom.hic2020-03-08 10:21 97M 
[TXT]scaffolds.rawchrom_asm.scaffold_track.txt2020-03-08 10:11 16M 
[TXT]scaffolds.rawchrom_asm.superscaf_track.txt2020-03-08 10:11 11M 
[ ]scaffolds.resolved.asm2020-03-08 09:33 641K 
[ ]scaffolds.resolved.cprops2020-03-08 09:11 4.8M 
[ ]scaffolds.resolved.hic2020-03-08 09:45 96M 
[ ]scaffolds.resolved.polish.assembly2020-03-08 09:53 5.5M 
[TXT]scaffolds.resolved_asm.scaffold_track.txt2020-03-08 09:34 16M 
[TXT]scaffolds.resolved_asm.superscaf_track.txt2020-03-08 09:34 11M 
[ ]scaffolds.split.asm2020-03-08 10:07 642K 
[ ]scaffolds.split.assembly2020-03-08 10:08 5.5M 
[ ]scaffolds.split.cprops2020-03-08 10:06 4.8M 
[TXT]scaffolds.split_asm.scaffold_track.txt2020-03-08 10:08 0  
[TXT]scaffolds.split_asm.superscaf_track.txt2020-03-08 10:08 11M 
[ ]suspect.at.step.0.bed2020-03-08 08:32 1.6K 
[ ]suspect.at.step.1.bed2020-03-08 09:11 25K 
[TXT]suspect_2D.at.step.0.txt2020-03-08 08:32 526K 
[TXT]suspect_2D.at.step.1.txt2020-03-08 09:11 124K 
[ ]z2020-03-08 05:57 380  
[ ]zL1030-3D.1.err2020-03-08 10:32 5.4K 
[ ]zL1030-3D.1.out2020-03-08 10:43 27K 
[ ]zL1030-3D.1.sbatch2020-03-08 05:57 584  
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